Directions
 
 

Research
Overview

Our interests focus on biomolecule characterization (both structure and activity) through the development of novel and existing mass spectrometry technology.

Our findings include:

  • Mass analysis of intact viruses - pdf1pdf2
  • Preparative MS with Electrospray - pdf3
  • Mass-based inhibitor-enzyme screen - pdf4pdf5
  • Observation of viral capsid dynamics - pdf6pdf7pdf8
  • Desorption/Ionization on Silicon (DIOS) - pdf9
  • XCMS: a nonlinear approach to align LC/MS data - pdf10
  • Nanostructure Initiated Mass Spectrometry (NIMS)

Publications

146 Yanes O., Hsu J., Wong D.M., Sanchez-Ruiz A., Benton H.P., Trauger S.A., Despont C., Ding S., Siuzdak G.
Endogenous metabolites regulate stem cell differentiation
submitted, 2008, ,      
 
145 Benton H.P., Wong D.M., Siuzdak G.
XCMS2: Processing tandem mass spectrometry data for metabolite identification and structural characterization
Analytical Chemistry, in press, 2008, ,      Related Page
 
144 Woo H-K., Northen T.R., Yanes O., Siuzdak G.
Nanostructure-Initiator Mass Spectrometry (NIMS): A protocol for preparing and applying NIMS surfaces for high sensitivity mass analysis
Nature Protocols, in press, 2008, ,      
 
143 Wikoff W.R., Pendyala G., Siuzdak G., Fox H.S.
CSF metabolome changes in SIV-infected monkeys reveal altered CNS phospholipase expression
Journal of Clinical Investigation, in press, 2008, ,      
 
142 Northen T.R., Lee J-C, Hoang L., Raymond J., Hwang D-R, Yannone S.M., Wong C-H, Siuzdak G.
A Nanostructure-Initiator Mass Spectrometry-Based Enzyme Activity Assay
PNAS, 2008, 105(10), 3678-3683      PDF File
 
141 Nordstrom A. Want E., Northen T., Lehtio J., Siuzdak G.
Multiple Ionization Mass Spectrometry Strategy Reveals the Complexity of Metabolomics
Analytical Chemistry, 2008, 80, 421-429      PDF File
 
140 Trauger S.A., Kalisiak E., Kalisiak J., Morita H., Weinbergb M.V., Menon A.L., Poole F.L. II, Adams M.W.W., Siuzdak G.
Correlating the Transcriptome, Proteome, and Metabolome in the Environmental Adaptation of a Hyperthermophile
Journal of Proteome Research, 2008, 7, 1027-1035      PDF File
 
139 O'Maille G., Hoang L., Nordstrom A., Go E.P., Qin C., Siuzdak G.
Metabolomics Mass Spectrometry Profiling using Chemical Derivatization with Isotope Labeling
in press, 2008, ,      
 
138 Yanes O., Northen T.R., Uritboonthai W., Estrada M.N., Manchester M., Siuzdak G.
Nanostructure Initiator Mass Spectrometry for Biological Tissue Imaging and Biofluid Analysis
, submitted, 2008, ,      
 
137 Volker V., Eraly S.A., Wikoff W.R., Rieg T., Kaler G., Truong D.M., Ahn S-A., Mhapatra N.R., Mahata S.K., Gangoiti J.A., Wu W., Barshop B.A., Siuzdak G., Nigam S.K.
Loss of Organic Anion Transporter 3 Results in Lowered Blood Pressure: Potential Role for Oat3 in the Transport of Endogenous Regulators of Blood Pressure
J. Am. Soc. of Nephrology, in press, 2008, ,      
 
136 Northen T.R., Yanes O., Northen M.T., Marrinucci D., Uritboonthai W., Apon J., Golledge S.L., Nordstrom A., Siuzdak G.
Clathrate Nanostructures for Mass Spectrometry
Nature, 2007, 449, 1033-1036      
 
135 Wikoff W.R., Gangoitti J.A., Barshop B.A., Siuzdak G.
Metabolomics Identifies Novel Perturbations in Human Disorders of Propionate Metabolism
Clinical Chemistry, 2007, 53, 2169-2176      
 
134 Go E.P., Uritboonthai W., Apon J.A., Trauger S.A., Nordstrom A., O'Maille G., Brittain S., Peters E.C., Siuzdak G.
Selective Metabolite and Peptide Capture/Mass Detection Using Fluorous Affinity Tags
Journal of Proteome Research, 2007, 6, 1492-1499      PDF File
 
133 Cohen L., Go E.P. , Siuzdak G.
Small Molecule Desorption/Ionization Mass Analysis
MALDI-MS Franz Hillenkamp - editor, 2007, IX, 299      PDF File
 
132 Nordstrom A., He L., Siuzdak G.
Desorption/Ionization on Silicon (DIOS)
Encyclopedia of Mass Spectrometry, Editor Michael Gross, 2007, 6, 676-683      PDF File
 
131 Northen T.R., Woo H.K., Northen M.T., Nordstrom A., Uritboonthai W., Turner K., Siuzdak G.
High Surface Area of Porous Silicon Drives Desorption of Intact Molecules
J. Am. Soc. Mass Spectrom., 2007, 18(11), 1945-1949      PDF File
 
130 Pendyala G., Want E.J., Webb W., Siuzdak G., Fox H.S.
Biomarkers for NeuroAIDS: The widening scope of Metabolomics
Journal of NeuroImmune Pharmacology, 2007, 2, 72-80      PDF File
 
129 Want E.J., Nordstrom A., Morita H., Siuzdak G.
From Exogenous to Endogenous: The Inevitable Imprint of Mass Spectrometry in Metabolomics
Journal of Proteome Research, 2007, 6(2), 459-468      PDF File
 
128 Northen T.R., Nordstrom A., Yanes O., Siuzdak G.
Nanostructure-Initiator Mass Spectrometry
patent application, 2007, ,      
 
127 Mutch D.M., O'Maille G., Wikoff W., Wiedmer T., Sims P.J., Siuzdak G.
Mobilization of pro-inflammatory lipids in obese Plscr3-deficient mice
Genome Biology, 2007, 8, R38      PDF File
 
126 Chace D.H., Barr J.R., Duncan M.W., Matern D., Morris M.R., Palmer-Toy D.E., Rockwood A.L., Siuzdak G., Urbani A., Yergey A.L., Chan Y.M.
Mass Spectrometry in the Clinical Laboratory: General Principles and Guidance
Clinical and Laboratory Standards Institute, 2007, 27, 1-91      
 
125 Lissauer M., Johnson S.B., Siuzdak G., Bochicchio G., Whiteford C., Nussbaumer W., Moore R., Scalea T.S.
Coagulation and Complement Protein Differences Between Septic and Uninfected SIRS Patients
The Journal of Trauma, Injury, Infection and Critical Care, 2007, 62(5), 1080-1094      PDF File
 
124 Nordstrom A., Apon J.V., Uritboonthai W., Go E.P., Siuzdak G.
Surfactant Enhanced Desorption/Ionization on Silicon (DIOS) Mass Spectrometry
Analytical Chemistry, 2006, 78, 272-278      PDF File
 
123 Want E.J., O'Maille G., Smith C.A., Brandon T.R., Uritboonthai W., Qin C., Trauger S.A., Siuzdak G.
Solvent-Dependent Metabolite Distribution, Clustering and Protein Extraction for Serum Profiling with Mass Spectrometry
Analytical Chemistry, 2006, 78, 743-752      PDF File
 
122 Siuzdak G.
The Expanding Role of Mass Spectrometry in Biotechnology - 2nd Edition
MCC Press, San Diego, 2006, III, 1-252      
 
121 Smith C.A., Want E.J., O'Maille G., Abagyan R., Siuzdak G.
XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching and identification
Analytical Chemistry, 2006, 78, 779-787      PDF File
 
120 Want E.J., Smith C., Siuzdak G.
Phospholipid Capture Combined with Non-Linear Chromatographic Correction for Improved Metabolite Profiling
Metabolomics, 2006, 2, 145-154      PDF File
 
119 Shen Z., Want E.J., Chen W., Keating W, Nussbaumer W, Moore R, Gentle T.M., Siuzdak G.
Sepsis Plasma Protein Profiling with Immunodepletion, Three-Dimensional Liquid Chromatography Tandem Mass Spectrometry and Spectrum Counting
Journal of Proteome Research, 2006, 5 (11), 3154 - 3160      PDF File
 
118 Lee J-C.,Wu C-Y., Apon J.V., Siuzdak G., Wong C-H.
Reactivity-Based One-Pot Synthesis of Tumor-Associated Antigen N3 Minor Octasaccharide: A Case Study of DIOS-MS Sugar Array**
Angew Chem Int Ed, 2006, 45, 2753 - 2757      PDF File
 
117 Go E.P., Wikoff W., Shen Z., O'Maille G., Morita H., Conrads T.P., Nordstrom A., Trauger S.A., Uritboonthai W., Lucas D., Chan K.C., Veenstra T.D., Lewicki H., Oldstone M.B., Schneemann A., Siuzdak G.
Mass Spectrometry Reveals Specific and Global Molecular Transformations during Viral Infection
Journal of Proteome Research, 2006, 5 (9), 2405 - 2416      PDF File
 
116 Nordstrom A., O'Maille G., Qin C., Siuzdak G.
Non-linear Data Alignment for UPLC-MS and HPLC-MS based Metabolomics: Quantitative Analysis of Endogenous and Exogenous Metabolites in Human Serum
Analytical Chemistry, 2006, 78, 7289-3295      PDF File
 
115 Steenwyk R., Hutzler J.M., Sams J., Shen Z., Siuzdak G.
Atmospheric Pressure Desorption/Ionization on Silicon Ion Trap Mass Spectrometry Applied to the Quantitation of Mdazolam in Plasma and Midazolam 1' - Hydroxylation Kinetics In Human Liver Microsomes
Rapid Communication in Mass Spectrometry, in press, 2006, 20, 3717-3722      PDF File
 
114 Smith C.A., O'Maille G., Want E.J., Qin C., Trauger S.A., Brandon T.R., Custodio D.E., Abagyan R., Siuzdak G.
METLIN: A Metabolite Mass Spectral Database
Therapeutic Drug Monitoring, 2005, 27(6), 747-751      PDF File
 
113 Lowe R., G E., Tong G., Voelcker N.H., Siuzdak G.
Monitoring EDTA and endogenous metabolite from serum with mass spectrometry
Spectroscopy, 2005, 19(13), 137-146      PDF File
 
112 Lacy E.R., Wang Y., Post J., Nourse A., Webb W., Mapelli M., Musacchio A., Siuzdak G., Kriwacki R.
Molecular Basis for the Specificity of p27 Toward Cyclin-dependent Kinases that Regulate Cell Division
Journal of Molecular Biology, 2005, 349, 764-773      
 
111 Bothner B., Taylor D., Jun B., Lee K., Siuzdak G., Schultz C.P., Johnson J.
Maturation of a tetravirus capsids alters the dynamic properties and creates a metastable complex
Virology, 2005, 334, 17-27      PDF File
 
110 Go E.P., Apon J.V., Luo G., Saghatelian A., Daniels R.H., Sahi V., Cravatt B., Vertes A., Dubrow R., Siuzdak G.
Desorption/Ionization of Silicon Nanowires
Analytical Chemistry, 2005, 77, 1641-6      PDF File
 
109 Want E., Cravatt B.F., Siuzdak G.
The Expanding Role of Mass Spectrometry in Metabolite Profiling and Characterization
ChemBioChem, 2005, 6, 1941-1951      PDF File
 
108 Talkington M.T., Siuzdak G., Williamson J.R.
An assembly landscape for the 30S ribosomal subunit
Nature, 2005, 438, 628-632      PDF File
 
107 Luo G., Chen Y., Siuzdak G., Vertes A.
Surface Modification and Laser Pulse Length Effects on Internal Energy Transfer in DIOS
Journal of Physical Chemistry B, 2005, 109, 24450-24456      PDF File
 
106 Siuzdak G.
An Introduction to Mass Spectrometry Ionization
Journal of the Association of Lab Automation, 2004, 9(2), 50-63      PDF File
 
105 Shen Z., Thomas J.J., Siuzdak G., Blackledge R.D.
A Case Study on Forensic Polymer Analysis by DIOS-MS
Journal of Forensic Science, 2004, 49, 1-8      PDF File
 
104 Meng J.-C., Siuzdak G., Finn M.G.
Affinity Mass Spectrometry from a Tailored Porous Silicon Surface
Chemical Communications, 2004, 18, 2108-2109      PDF File
 
103 Kriwacki R., Reisdorph N., Siuzdak G.
Protein Structure Characterization with Mass Spectrometry
Spectroscopy, 2004, 18, 37-47      PDF File
 
102 Wu, E., Trauger, S.A., Pache, L., Mullen, T.-M., Von Seggern, D.J., Siuzdak, G., Nemerow, G.R.
Membrane Cofactor Protein (MCP: CD46) is a Receptor for Adenoviruses Associated with Epidemic Keratoconjunctivitis
Journal of Virology, 2004, 78, 3897-3905      PDF File
 
101 Meng J.-C., Averbuj C., Siuzdak G., Finn M.G.
Cleavable Linkers for Porous Silicon-Based Mass Spectrometry
Angewandte Chemie, 2004, 43, 1255-1260      PDF File
 
100 Bothner B., Siuzdak G.
Electrospray Ionization of a Whole Virus: Analyzing Mass, Structure and Viability
ChemBioChem, 2004, 5(3), 258-260      PDF File
 
99 Shen Z., Go E.P., Gamez A., Apon J.V., Fokin V., Greig M., Ventura M., Crowell J.E., Blixt O., Paulson J.C., Stevens R., Finn M.G., Siuzdak G.
A Mass Spectrometry Plate Reader: Monitoring Enzyme and Inhibitor Activity with Desorption/Ionization on Silicon (DIOS) Mass Spectrometry
ChemBioChem, 2004, 5, 921-927      PDF File
 
98 Thomas J.J., Bothner B., Traina J., Benner W.H., Siuzdak G.
Electrospray Ion Mobility Spectrometry of Intact Viruses
Spectroscopy, 2004, 18, 31-36      PDF File
 
97 Trauger S., Go E.P., Shen Z., Apon J.V., Compton B., Bouvier E.S.P., Finn M.G., Siuzdak G.
High Sensitivity and Analyte Capture with Desorption/Ionization Mass Spectrometry on Silylated Silicon
Analytical Chemistry, 2004, 76, 4484-4489      PDF File
 
96 Siuzdak G., Go E., Shen Z., Compton B., Bouvier E.
Methods, Compositions and Devices for Performing Ionization Desorption on Silicon Derivatives
patent application, 2004, ,      
 
95 Trauger S.A., Wu E., Bark S.B., Nemerow G.R., Siuzdak G.
The Identification of a Unique Adenovirus Receptor Using Affinity-Capture and Mass Spectrometry
ChemBioChem, 2004, 5(8), 1095-1099      PDF File
 
94 Saghatelian A., Trauger S.A., Want E., Hawkins G., Siuzdak G., Cravatt B.F.
Assignment of Endogenous Substrates to Enzyme by Global Metabolite Profiling
Biochemistry, 2004, 43, 14332-14339      PDF File
 
93 Want E.J., Greig M., Compton B.J., Bolaņos B., Siuzdak G.
Mass Spectrometry in High Throughput Analysis
Spectroscopy, 2003, 17, 663-680      PDF File
 
92 Want E., Compton B.J., Hollenbeck T., Siuzdak G.
The Application of Mass Spectrometry in Pharmacokinetics
Spectroscopy, 2003, 17, 681-691      PDF File
 
91 Siuzdak G.
The Expanding Role of Mass Spectrometry in Biotechnology
MCC Press: San Diego, 2003, ,      
 
90 Prenni J.E., Shen Z., Trauger S., Chen W., Siuzdak G.
Protein Characterization using Liquid Chromatography Desorption Ionization on Silicon Mass Spectrometry (LC-DIOS-MS)
Spectroscopy, 2003, 17, 693-698      PDF File
 
89 Compton B.J., Siuzdak G.
Mass Spectrometry in Nucleic Acid, Carbohydrate, and Steroid Analysis
Spectroscopy, 2003, 17, 699-713      PDF File
 
88 Barker, G., Want, E., Boydston, J., Siuzdak, G.
Mass Spectrometry
Science of Synthesis/ Houben-Weyl, 2003, 7.6, 680-695      PDF File
 
87 Lewis W., Shen Z., Finn M.G., Siuzdak G.
Desorption/ionization on silicon (DIOS) mass spectrometry: background and applications
International Journal of Mass Spectrometry, 2003, 226, 107-116      PDF File
 
86 Meyers A., Trauger S., Webb W., Reisdorph N., Wranik C., Peters E., Siuzdak G.
Protein Profiling with Mass Spectrometry
Spectroscopy, 2003, 17, 1-15      
 
85 Yao S., Meng J., Siuzdak G., Finn M.G.
New Catalysts for Asymmetric Hydrosilylation of Ketones Discovered by Parallel Mass Screening
Journal of Organic Chemistry, 2003, 68, 2540-2546      PDF File
 
84 Trauger S.A., Junker T., Siuzdak G.
Investigating Viral Proteins and Intact Viruses with Mass Spectrometry
Modern Mass Spectrometry, 2003, 225, 265-282      
 
83 Go E.P., Prenni J.E., Wei J., Jones A., Hall S.C., Witkowska E., Shen Z., Siuzdak G.
Desorption/Ionization on Silicon Time-of-Flight/Time-of-Flight (DIOS-TOF/TOF) Mass Spectrometry
Anal. Chem., 2003, 75, 2504-2506      PDF File
 
82 Borman S., Russell H., Siuzdak G.
A Mass Spectrometry Timeline
Today's Chemist, 2003, , 47-49      PDF File
 
81 Reisdorph N., Thomas J.J., Katpally U., Chase E., Harris K., Siuzdak G., Smith T.J.
Human Rhinovirus Capsid Dynamics is Controlled by Canyon Flexibility
Virology, 2003, 314, 34-44      PDF File
 
80 Go E.P., Shen Z., Harris K., Siuzdak G.
Quantitative Analysis with Desorption/Ionization on Silicon (DIOS) Mass Spectrometry using Electrospray Deposition
Analytical Chemistry, 2003, 75, 5475-5479      PDF File
 
79 Gentle T., Shen Z., Want E., Siuzdak G., and Others
Diagnosis of Disease using Biomarker Profiles
patent application, 2003, ,      
 
78 Sonderegger M., Staniszewski K., Meyers A., Siuzdak G.
A Bioinformatics Approach for Mass Spectrometry Data Processing: Applications to Proteomics and Small Molecule Analysis
Spectroscopy, 2002, 16, 81-87      PDF File
 
77 Shen Z., Yao S., Crowell J., Siuzdak G., Finn M.G.
DIOS-MSEED: A Chip-Based Method for Measurement of Enantiomeric Excess by Kinetic Resolution/Mass Spectrometry
Israel Journal of Chemistry special issue commemorating Wolf Prize to Sharpless, Kagan and Noyori, 2002, 41, 313-316      PDF File
 
76 Grayson M. Editor, Siuzdak G.
Contributor-Biological Mass Spectrometry Measuring Mass: From Positive Rays to Proteins
Chemical Heritage Press, 2002, , 149      
 
75 Compton B., Siuzdak G.
Methods for Identifying Compounds from a Sample Matrix
Patent Application, 2002, ,      
 
74 Bothner B., Carmitchel L., Staniszewski K., Sonderegger M., Siuzdak G.
Biomolecule Structure Characterization in the Gas Phase using Mass Spectrometry
Spectroscopy, 2002, 16, 71-79      PDF File
 
73 Smith T.J., Schmidt T., Fang J., Wu J., Siuzdak G., Stanley C.
The Structure of Apo Human Glutamate Dehydrogenase Elucidates the Mechanism of Subunit Communication and the Hyerinsulinism/Hyperammonemia Syndrome
Journal of Molecular Biology, 2002, 318, 765-777      PDF File
 
72 Trauger S.A., Webb W., Siuzdak G.
Peptide and Protein Analysis with Mass Spectrometry
Spectroscopy, 2002, 16, 15-28      PDF File
 
71 Thomas J.J., Blackledge R.D., Siuzdak G.
Desorption-Ionization on Silicon Mass Spectrometry: An Application in Forensics
Analytica Chemica Acta, 2001, 442, 183-190      PDF File
 
70 Shen Z., Thomas J.J., Averbuj C., Broo K.M., Engelhard M., Crowell J.E., Finn M.G., Siuzdak G.
Porous Silicon as a Versatile Platform for Laser Desorption/Ionization Mass Spectrometry
Analytical Chemistry, 2001, 33, 179-187      PDF File
 
69 Broo K.M., Wei J., Marshall D., Brown F., Smith T.J., Johnson J.E., Schneemann A., Siuzdak G.
Viral Capsid Mobility: A Dynamic Conduit for Inactivation
Proceedings of the National Academy of Sciences, 2001, 98, 2274-2277      PDF File
 
68 Thomas J.J., Shen Z., Crowell J.E., Finn M.G., Siuzdak G.
Desorption/Ionization on Silicon (DIOS): A Diverse Mass Spectrometry Platform for Protein Characterization
Proceedings of the National Academy of Sciences, 2001, 98, 4932-4937      PDF File
 
67 Bark S.J., Muster N., Yates J.R., Siuzdak G.
High-Temperature Protein Mass Mapping Using a Thermophilic Protease
Journal of the American Chemical Society, 2001, 123, 1774-1775      PDF File
 
66 Fuerstenau S.D., Benner W.H., Thomas J.J., Brugidou C., Bothner B., Siuzdak G.
Mass Spectrometry of an Intact Virus
Angewandte Chemie, 2001, 40, 542-544      PDF File
 
65 Kriwacki R., Siuzdak G.
Probing Protein/Protein Interactions with Mass Spectrometry
Methods in Molecular Biology Humana Press, 2000, ,      PDF File
 
64 Thomas J.J., Bakhtiar R., Siuzdak G.
Mass Spectrometry in Viral Proteomics
Accounts of Chemical Research, 2000, 33, 179-187      PDF File
 
63 Lewis J.K., Wei J., Siuzdak G.
MALDI Mass Spectrometry in Protein and Peptide Analysis
Encyclopedia of Analytical Chemistry, John Wiley and Sons, NY, 2000, ,      PDF File
 
62 Bothner B., Chavez R., Wei J., Strupp C., Phung Q., Schneemann A., Siuzdak G.
Monitoring Enzyme Catalysis with Mass Spectrometry
Journal of Biological Chemistry, 2000, 275, 13455-13459      PDF File
 
61 Guo J., Wu J., Siuzdak G., Finn M.G.
Measurement of Enantiomeric Excess by Kinetic Resolution and Mass Spectrometry
Angewandte Chemie Int. Ed., 1999, 38, 1755-1758      PDF File
 
60 Schalley C.A., Rivera J.M., Martin T., Santamaria J., Siuzdak G., Rebek, J. Jr.
Structural Examination of Supramolecular Architectures by Electrospray Ionization Mass Spectrometry
Eur. J. Org. Chem., 1999, , 1325-1331      PDF File
 
59 Schalley C.A., Castellano R.K., Brody M.S., Rudkevich D.M., Siuzdak G., Rebek J.
Investigating Molecular Recognition by Mass Spectrometry: Characterization of Calixarene-Based Self-Assembling Capsule Hosts with Charged Guests
J. Am. Chem. Soc., 1999, 121(19), 4568-4579      PDF File
 
58 Hollenbeck T., Siuzdak G., Blackledge R.D.
Electrospray and MALDI Mass Spectrometry in the Identification of Spermicides in Criminal Investigations
Journal of Forensic Sciences, 1999, 44, 783-788      PDF File
 
57 Takayama S., Chung S.J., Igarashi Y., Ichikawa Y., Sepp A., Lechler R.I., Wu J.Y. Hayashi T., Siuzdak G., Wong C.H.
Selective inhibition of beta-1,4- and alpha-1,3-galactosyltransferases: Donor sugar-nucleotide based approach
Bioorganic & Medicinal Chemistry, 1999, 7, 401-409      PDF File
 
56 Tsui V., Garcia C., Cavagnero S., Siuzdak G., Dyson H.J., Wright P.E.
Quench-Flow Experiments Combined with Mass Spectrometry Show Apomyoglobin Folds through an Obligatory Intermediate
Protein Science, 1999, 8, 45-49      PDF File
 
55 Marmey P., Bothner B., Jacquot E., de Kochko A., Ong C.A., Yot P., Siuzdak G., Beachy R.N., Fauquet C.
Rice Tungro Bacilliform Virus Open Reading Frame 3 Encodes a Single 37-kDa Coat Protein
Virology, 1999, 253, 319-326      PDF File
 
54 Siuzdak G.
Innovations Continue in Mass Spectrometry
Advance, 1999, 8(1), 30-34      PDF File
 
53 Siuzdak G., Hollenbeck T., Bothner B.
Preparative Mass Spectrometry with Electrospray Ionization
Journal of Mass Spectrometry, 1999, 34, 1087-1088      PDF File
 
52 Chatman K.S., Hollenbeck T., Hagey L., Vallee M., Purdy R., Weiss F., Siuzdak G.
Nanoelectrospray Mass Spectrometry and Precursor Ion Monitoring for Quantitative Steroid Analysis and Attomole Sensitivity
Analytical Chemistry, 1999, 71, 2358-2363      PDF File
 
51 Siuzdak G.
Mass Spectrometry
in The Encyclopedia of Molecular Biology T.E. Creighton, Ed., John Wiley & Sons, Inc., New York, NY, 1999, ,      
 
50 Bothner B., Schneemann A., Marshall D., Reddy V., Johnson J.E., Siuzdak G.
Crystallographically Identical Virus Capsids Display Different Properties in Solution
Nature Structural Biology, 1999, 6, 114-116      PDF File
 
49 Lewis J.K., Chiang J., Siuzdak G.
Monitoring Protein-Drug Interactions with Mass Spectrometry and Proteolysis Protein Mass Mapping as a Drug Assay
Journal of the Association for Laboratory Automation, 1999, 4, 46-48      PDF File
 
48 Yang C., Gu Z., Yang M., Lin S., Siuzdak G., Smith C.V.
Identification of Modified Tryptophan Residues in Apolipoprotein B-100 Derived from Copper Ion-Oxidized Low-Density Lipoprotein
Biochemistry, 1999, 38, 15903-15908      PDF File
 
47 Wei J., Buriak J., Siuzdak G.
Desorption/Ionization Mass Spectrometry on Porous Silicon
Nature, 1999, 399(6733), 243-246      PDF File
 
46 Siuzdak G., Buriak J., Wei J.
Improved Methods for Laser Desorption from Porous Semiconductors
patent #6, 1999, 288, 390      
 
45 Siuzdak G.
Probing Molecular Diversity with Mass Spectrometry
Journal of the Association for Laboratory Automation, 1998, 3(2), 34-37      PDF File
 
44 Niece, R., Siuzdak, G.
Joint ABRF/ASBMB Symposium: Present and Future of Biomolecular Mass Spectrometry
Journal of Biomolecular Techniques, 1998, 9, 22-23      
 
43 Owens D.R., Bothner B., Harris K., Phung Q., Siuzdak G.
Aspects of Oligonucleotide and Peptide Sequencing with MALDI and Electrospray Mass Spectrometry
Bioorganic and Medicinal Chemistry, 1998, 6, 1547-1554      PDF File
 
42 Siuzdak G.
Probing Viruses with Mass Spectrometry
Journal of Mass Spectrometry, 1998, 33(3), 203-211      PDF File
 
41 Bothner B., Dong X.F., Bibbs L., Johnson J.E., Siuzdak G.
Evidence of Viral Capsid Dynamics Using Limited Proteolysis and Mass Spectrometry
Journal of Biological Chemistry, 1998, 273(2), 673-676      PDF File
 
40 Siuzdak G., Lewis J.K.
Applications of Mass Spectrometry in Combinatorial Chemistry
Biotechnology & Bioengineering with Combinatorial Chemistry, 1998, 61(2), 127-134      PDF File
 
39 Siuzdak G., Henriksen S.
New Directions in the Analysis of Brain Substances Related to Sleep and Wakefulness
Lydic, R. CRC Press, Methods in the Life Sciences Series; Molecular regulation of arousal states., 1998, , 181-190      PDF File
 
38 Lewis J.K., Bothner B., Smith T.J., Siuzdak G.
Antiviral Agent Blocks Breathing of Common Cold Virus
Proceedings of the National Academy of Sciences, USA, 1998, 95(12), 6774-6778      PDF File
 
37 Lewis J.K., Bendahmane M., Smith T.J., Beachy R.N., Siuzdak G.
Identification of Viral Mutants by Mass Spectrometry
Proceedings of the National Academy of Sciences, USA, 1998, 95, 8596-8601      PDF File
 
36 Kriwacki R., Siuzdak G.
Combined Use of Proteases and Mass Spectrometry in Structural Biology
Journal of Biomolecular Techniques, 1998, 9, 5-15      PDF File
 
35 Kriwacki R., Wu J., Tennant L., Wright P.E., Siuzdak G.
Probing Protein Structure Using Biochemical and Biophysical Methods: Proteolysis, Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry, High-Performance Liquid Chromatography and Size Exclusion Chromatography of p21graphy of p21Waf1/Cip1/Sdi1
Journal of Chromatography A, 1997, 777, 23-30      PDF File
 
34 Takayama S., Martin R., Wu J., Laslo K., Siuzdak G., Wong C.H.
Chemoenzymatic Preparation of Novel Cyclic Imine Sugars and Rapid Biological Activity Evaluation Using Electrospray Mass Spectrometry and Kinetic Analysis
Journal of the American Chemical Society, 1997, 119(35), 8146-8151      PDF File
 
33 Wu J., Chatman K.S., Harris K., Siuzdak G.
An Automated MALDI Mass Spectrometry Approach for Optimizing Cyclosporin Analysis
Analytical Chemistry, 1997, 69(18), 3767-3771      PDF File
 
32 Wu J., Takayama S., Wong C.H., Siuzdak G.
Quantitative Electrospray Mass Spectrometry for the Rapid Assay of Enzyme Inhibitors
Chemistry & Biology, 1997, 4(9), 653-657      PDF File
 
31 Siuzdak G.
Mass Spectrometry for Biotechnology
Academic Press: San Diego, CA, 1996, , 161      
 
30 Fitzgerald M.C., Siuzdak G.
Biochemical Mass Spectrometry: Worth the Weight?
Chemistry and Biology, 1996, 3, 707-715      PDF File
 
29 Kriwacki R., Wu J., Siuzdak G., Wright P.E.
Probing Protein-Protein Interactions by Mass Spectrometry: Analysis of the p21/Cdk2 Complex
Journal of the American Chemical Society, 1996, 118, 5320-5321      PDF File
 
28 Fitzgerald M.C., Harris K., Shevlin C.G., Siuzdak G.
Direct Characterization of Solid Phase Resin-Bound Molecules by Mass Spectrometry
Bioorganic and Medicinal Chemistry Letters, 1996, 6(8), 979-982      PDF File
 
27 Siuzdak G., Bothner B., Yeager M., Brugidou C., Fauquet C.M., Hoey K., Chang C.M.
Mass Spectrometry and Viral Analysis
Chemistry & Biology, 1996, 3, 45      PDF File
 
26 Lerner R.A., Cravatt B., Boger D.L., Siuzdak G. and Henriksen S.
Method for Sleep Induction
international PCT patent application WO 96/09817, 1996, ,      
 
25 Chang H.T., Chen C.T., Kondo T., Siuzdak G., and Sharpless K.B.
Asymmetric Dihydroxylation Enables Rapid Construction of Chiral Dendrimers based on 1,2-Diols
Angewandte Chemie, 1996, 35(2), 182-186      PDF File
 
24 Bothner B., Chatman K.S., Sarkisian M., Siuzdak G.
Liquid Chromatography Mass Spectrometry of Antisense Oligonucleotides
Bioorganic and Medicinal Chemistry Letters, 1995, 5(23), 2863-2868      PDF File
 
23 Siuzdak G., Bothner B.
Gas-Phase Micelles
Angewandte Chemie, 1995, 34(18), 2053-2055      PDF File
 
22 Cravatt B., Prospero-Garcia O., Siuzdak G., Gilula N.B., Henriksen S.J., Boger D.L., Lerner R.A.
Chemical Characterization of a Family of Brain Lipids with Sleep Inducing Potential
Science, 1995, 268, 1506-1509      PDF File
 
21 Krebs J.F., Siuzdak G., Dyson H.J., Stewart J.D., Benkovic S.
Detection of a Catalytic Antibody Species Acylated at the Active Site by Electrospray Mass Spectrometry
Biochemistry, 1995, 34, 720-723      PDF File
 
20 Siuzdak G., Zheng Y.L., Ramphal J.Y., Ichikawa Y., Nicolaou K.C., Gaeta F.C.A., Chatman K.S., Wong C.H.
Examination of the Sialyl Lewis X- Calcium Complex by Electrospray Mass Spectrometry
Bioorganic and Medicinal Chemistry Letters, 1994, 4, 2863-2866      PDF File
 
19 Siuzdak G.
The Emergence of Mass Spectrometry in Biochemical Research
Proceedings of the National Academy of Sciences of the United States of America, 1994, 91, 11290-11297      PDF File
 
18 Lerner R.A., Siuzdak G., Prospero-Garcia O., Henriksen S.J., Boger D.L., Cravatt B.
Cerebrodiene: A Brain Lipid Isolated from Sleep-Deprived Cats
Proceedings of the National Academy of Sciences of the United States of America, 1994, 91, 9505-9508      
 
17 Stewart J.D., Krebs J.F., Siuzdak G., Berdis A.J., Smithrud D.B., Benkovic S.J.
Dissection of an Antibody-Catalyzed Reaction
Proc. Natl. Acad. Sci., 1994, 91, 7404-7409      PDF File
 
16 Siuzdak G., Krebs J.F., Benkovic S.J., Dyson H.J.
Binding of Hapten to a Single-Chain Catalytic Antibody Demonstrated by Electrospray Mass Spectrometry
Journal of the American Chemical Society, 1994, 116, 7937-7938      PDF File
 
15 Crano J., Knowles D., Kwiatkowski P., Flood T., Ross R., Chiang L., Lasch J., Chadha R., Siuzdak G.
Structure of Three Novel Photochromic Compounds; X-ray Crystallographic and Theoretical Studies
Acta Crystallographica Section B-Structure Science, 1994, 50, 772-779      PDF File
 
14 Rideout D., Bustamante A., Siuzdak G.
Cationic Drug Analysis Using Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry: Application to Influx Kinetics, Multidrug Resistance and Intracellular Chemical Change
Proceedings of the National Academy of Sciences of the United States of America, 1993, 90(21), 10226-10229      PDF File
 
13 Siuzdak G., Ichikawa Y., Munoz B., Caulfield T.J., Wong C.H., Nicolaou K.C.
Evidence of Calcium-Dependent Carbohydrate Association through Ion Spray Mass Spectrometry
Journal of the American Chemical Society, 1993, 115, 2877-2881      PDF File
 
12 Siuzdak G., Wendeborn S.V., Nicolaou K.C.
Cationization of Organometallo Carbonyl Compounds by Fast Ion Bombardment
Intern. J. of Mass Spectrom. and Ion Proc., 1992, 112, 79-91      PDF File
 
11 BelBruno J.J., Siuzdak G.
Resonant Ionization in Solution: Initiation of ion-molecule chemistry by REMPI
Resonance Ionization Spectroscopy 90, Inst. Phys. Conf. Ser., 1991, 114, 351-354      PDF File
 
10 BelBruno J.J., Siuzdak G.
REMPI-MS: Application to the Study of the Gas Phase Dynamics of Radical Cations
Resonance Ionization Spectroscopy 90, Inst. Phys. Conf. Ser., 1991, 114, 177-180      PDF File
 
9 Siuzdak G., BelBruno J.J.
Multiphoton Ionization of Nitrobenzene in Non-Aqueous Solutions: Characterization of the Cation and Ion-Molecule Chemistry
Laser Chemistry, 1991, 11(2), 83-93      PDF File
 
8 Siuzdak G., North S., BelBruno J.J.
Multiphoton Ionization of Phenol in NonAqueous Solutions: Characterization of the Cation and Ion-Molecule Chemistry
J. Phys. Chem., 1991, 95(13), 5186-5190      PDF File
 
7 BelBruno J.J., Siuzdak G., North S.
Multiphoton-Induced Chemistry of Phenol in Hexane at 266nm
Chem. Phys. Lett., 1990, 166, 167-172      PDF File
 
6 BelBruno J.J., Siuzdak G., North S.
UV Multiphoton Induced Chemistry of Nitrobenzene in Solution
Laser Chemistry, 1990, 10, 177-184      PDF File
 
5 Siuzdak G., BelBruno J.J.
Multiphoton Ionization Studies of Amines with UV-VIS Lasers
Applied Physics B, 1990, 50, 221-226      PDF File
 
4 Siuzdak G., BelBruno J.J.
Laser Multiphoton Dissociation/Ionization of Butylamines: Competitive Processes in Radical Cations
J. Phys. Chem., 1990, 94(11), 4559-4565      PDF File
 
3 Siuzdak G.
Multiphoton-Induced Chemistry
Ph. D. Thesis University Microfilms International, Dissertation Abstracts International B, 1990, 51(5)2385, 166      
 
2 Marzzacco C.J., Deckey G., Colarulli R., Siuzdak G., Halpern A.
Excited-State Protonation and Photophysical Properties of Azaphenanthrenes
J. Phys. Chem., 1989, 93, 2935-2939      PDF File
 
1 Siuzdak G.
The protonation of 7,8-benzoquinoline in its lowest excited singlet
B.S. Thesis, Rhode Island College,, 1985, ,      
 


             

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