Publications
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| Author | Title | Publication |
|---|---|---|
| Warth B., Levin N., Rinehart D., Teijaro J., Benton H. P., Siuzdak G. | Metabolizing Data in the Cloud | Trends in Biotechnology, 2017, , available online |
| Montenegro-Burke J. R., Aisporna A. E., Benton H. P., Rinehart D., Fang M., Huan T., Warth B., Forsberg E., Abe B. T., Ivanisevic J., Wolan D. W. , Teyton L., Lairson L., and Siuzdak G. | Data Streaming for Metabolomics: Accelerating Data Processing and Analysis from Days to Minutes | Analytical Chemistry, 2017, 89 (2), 1254–1259 |
| Ivanisevic J., Stauch K., Petrascheck. M., Benton H.P., Epstein A., Fang M., Gorantla S., Tran M., Hoang L., Boska M., Gendelman H., Fox H., Siuzdak G. | Metabolic Drift in the Aging Brain | Aging, 2016, May 8(5), 1000-20 |
| Paris L., Johnson C., Aguilar E., Usui Y., Cho K., Hoang L., Feitelberg D., Benton H.P., Westenskow P., Kurihara T., Trombley J., Patti G., Ivanisevic J., Siuzdak G, Friedlander M. | Global metabolomics reveals metabolic dysregulation in ischemic retinopathy | Metabolomics, 2016, |
| Kurczy M., Forsberg E., Thorgersen M., Poole II F., Benton H.P., Ivanisevic J., Tran M., Wall J., Elias D., Adams M., Siuzdak G. | Global Isotope Metabolomics Reveals Adaptive Strategies for Nitrogen Assimilation | ACS Chemical Biology, 2016, 11(6), 1677-85 |
| Wang J., Westenskow P., Fang M., Friedlander M., Siuzdak G. | Philosophical Transactions A, 2016, 374(2079) | |
| Kurihara K., Westenskow P., Gantner M., Usui Y., Schultz A., Bravo S., Aguilara E., Wittgrove C., SanGiovanni J., Friedlander M., Paris L., Chew E., Siuzdak G., Friedlander M. | Hypoxia induced metabolic stress in RPE cells is sufficient to induce photoreceptor degeneration | eLife, 2016, 15;5 |
| Johnson C., Ivanisevic J., Siuzdak G. | Metabolomics: Beyond Biomarkers and Towards Mechanisms | Nature Reviews Molecular Cell Biology, 2016, 17(7), 451-9 |
| Montenegro-Burke J. R., Phommavongsay T., Aisporna A.E., Huan T., Rinehart D., Forsberg E., Thorgersen M. P., Adams M. W. W., Northen T. R., Robbins P.D., Niedernhofer L. J., Lairson L., Benton H. P., Siuzdak G. | Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses | Analytical Chemistry, 2016, |
| Kurczy M., Northen T., Trauger, S.A., Siuzdak, G. | Nanostructure Imaging Mass Spectrometry: The Role of Fluorocarbons in Metabolite Analysis and the Road to Yoctomole Level Sensitivity | "Methods in Molecular Biology: Mass Spectrometry Imaging of Small Molecules", 2015, 1203, 141-9 |
| Johnson C., Ivansevic J., Benton P., Siuzdak G. | Bioinformatics: The Next Frontier of Metabolomics | Analytical Chemistry, 2015, 87(1), 147-156 |
| Benton H.P., Ivanisevic J., Rinehart D., Epstein A.A., Gendelman H., Siuzdak G. | An Interactive Cluster Heat Map to Visualize and Explore Multidimensional Metabolomic Data | Metabolomics, 2015, Aug1;11(4), 1029-1034 |
| Kiyota T., Morrison C.M., Kurczy M.E., Zhang G., Epstein A.A., Boska M.D., Siuzdak G., Gendelman H.E. | Presenilin-1 familial Alzheimer´s disease mutation affects hippocampal neurogenesis in CCL2 null mice independent of ß-amyloidosis | Brain, Behavior, and Immunity, 2015, Oct (49), 311-321 |
| Benton H.P., Ivanisevic J., Mahieu N., Kurczy M., Johnson C., Franco L., Rinehart D., Valentine E., Gowda H., Ubhi K., Tautenhahn R., Gieschen A., Fields M.,Patti G., Siuzdak G. | Autonomous Metabolomics for Rapid Metabolite Identification in Global Profiling | Analytical Chemistry, 2015, 87(2), 884-891 |
| Kurczy M., Zhu Z., Ivanisevic J., Schuyler A., Lalwani K., Santidrian A., David J., Giddabasappa A., Olivos H., O'Brien P., Franco L., Fields M., Paris L., Friedlander M, Johnson C., Epstein A., Gendelman H., Felding B., Patti G., Spilker M., Siuzdak G. | Comprehensive bioimaging with fluorinated nanoparticles using breathable liquids | Nature Communications, 2015, Jan 20;6, 5998 |
| Johnson C., Dejea C., Edler D., Hoang L., Santidrian A., Felding B., Ivanisevic J., Cho K., Wick E., Hechenbleikner E., Uritboonthai W., Goetz L., Casero R., Pardoll D., White J., Patti G., Sears C., and Siuzdak G. | Metabolism Links Bacterial Biofilms and Colon Carcinogenesis | Cell Metabolism, in press, 2015, |
| Ivanisevic J., Elias D., Deguchi H., Averell P., Kurczy M., Johnson C., Tautenhahn R., Zhu Z., Watrous J., Jain M., Griffin J., Patti G. and Siuzdak G. | Arteriovenous Blood Metabolomics: A Readout of Intra-Tissue Metabostasis | Scientific Reports, 2015, Aug 5:5, 12757 |
| Ivanisevic J. and Siuzdak G. | The Role of Metabolomics in Brain Metabolism Research | Journal of Neuroimmune Pharmacology, 2015, Sep;10(3), 391-5 |
| Nikolskiy I., Siuzdak G., Patti GJ. | Discriminating precursors of common fragments for large-scale metabolite profiling by triple quadrupole mass spectrometry | Bioinformatics, 2015, Jun (31), 207-213 |
| Deguchi H., Banerjee Y., Trauger S., Siuzdak G., Kalisiak E., Fernandez J., Hoang L., Tran M., Yegneswaran S., Elias D., Griffin J.H. | Acylcarnitines are anticoagulants that inhibit factor Xa and are reduced in venous thrombosis based on metabolomics data | Blood , 2015, |
| Fang M., Ivanisevic J., Benton H.P., Johnson C., Patti G., Hoang L., Uritboonthai W., Kurczy M., and Siuzdak G. | Thermal Degradation of Small Molecules: A Global Metabolomic Investigation | Anal. Chem., 2015, 87 (21) , 10935 - 10941 |
| Johnson C., Patti G., Courade JP., Shriver L., Hoang L., Manchester M., Siuzdak G. | Alterations in Spinal Cord Metabolism during Treatment of Neuropathic Pain | Journal of Neuroimmune Pharmacology, 2015, Sept (10), 396-401 |
| Kurczy M., Ivanisevic J., Johnson C., Uritboonthai W., Hoang L., Fang M., Hicks M., Aldebot A., Rinehart D., Mellander L., Tautenhahn R., Patti P., Spilker M., Benton H.P.and Siuzdak G. | Determining conserved metabolic biomarkers from a million database queries | Bioinformatics , 2015, 31 (23), 3721-3724. |
| Patti G.J., Tautenhahn R., Johannsen D., Kalisiak E., Ravussin E., Bruning J.C., Dillin A., Siuzdak G. | Meta-Analysis of Global Metabolomic Data Identifies Metabolites Associated with Life-Span Extension | Metabolomics, 2014, vol10(4), 737-743 |
| Gowda H., Ivanisevic J., Johnson C.H., Kurczy M.E., Benton H.P., Rinehart D., Nguyen T., Ray J., Kuehl J., Arevalo B., Westenskow P.D., Wang J., Arkin A.P., Deutshbauer A.M., Patti G.J., Siuzdak G. | Interactive XCMS Online: Simplifying Advanced Metabolomic Data Processing and Subsequent Statistical Analyses | Analytical Chemistry, 2014, 86(14), 6931-9 |
| Johnson C.H., Fisher T.S., Hoang L.T., Felding B.H., Siuzdak G., O'Brien P.J. | Luciferase does not Alter Metabolism in Cancer Cells | Metabolomics (cover article), 2014, |
| Rinehart D., Johnson C.H., Nguyen T., Ivanisevic J., Benton H.P., Lloyd J., Deutschbauer A., Arkin A., Patti G.J., Siuzdak G. | Metabolomic Data Streaming for Biology-Dependent Data Acquisition | Nature Biotechnology, 2014, 32(6), 524-527 |
| Deguchi H., Elias D.J., Trauger S., Zhang H.M., Kalisiak E., Siuzdak G., Griffin J.H. | Warfarin untargeted metabolomics study identifies novel procoagulant ethanolamide plasma lipids. | Br J Haematol., 2014, May;165(3), 409-412 |
| Cho K., Mahieu N., Ivanisevic J., Uritboonthai W., Chen Y-Jr., Siuzdak G., Patti G. | isoMETLIN: A Database for Isotope-Based Metabolomics | Analytical Chemistry, 2014, 86(19), 9358-61 |
| Ivanisevic J., Epstein A., Kurzcy M., Benton H.P., Uritboonthai W., Fox H.S., Boska M.D., Gendelman H.E., Siuzdak G. | Brain Region Mapping using Global Metabolomics | Chemistry & Biology, (cover and feature article), 2014, 21(11), 1575-1584. |
| Patti G.J., Tautenhahn R., Rinehart D., Cho K., Nikolskiy I., Johnson C., Siuzdak G. | A View from Above: The Cloud Plot for Visualizing Global Metabolomic Data | Analytical Chemistry (selected as an Editor's Highlight), 2013, 85(2), 798-804 |
| Zhu Z-J., Schultz A.W., Wang J., Johnson C.H., Yannone S.M., Patti G.J., Siuzdak G. | Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database | Nature Protocols, 2013, 8, 451-460 |
| Patti G.J., Siuzdak G. | book in preparation, 2013, | |
| O'Brien P.J., Lee M., Spilker M.E., Zhang C., Yan Z., Nicholls T.C., Li W., Johnson C.H., Patti G.J., Siuzdak G. | Monitoring metabolic responses to chemotherapy in single cells and tumors using nanostructure-initiator mass spectrometry (NIMS) imaging | Cancer and Metabolism, 2013, 1(1), 4 |
| Blankman J.L., Long J.Z., Trauger S.A., Siuzdak G., Cravatt B. | ABHD12 controls brain lysophosphatidylserine pathways that are deregulated in a murine model of the neurodegenerative disease PHARC | Proc Natl Acad Sci USA, 2013, 110(4), 1500-5 |
| Ivanisevic J., Zhu Z., Plate L., Tautenhahn R., Chen S., O’Brien P.J., Johnson C.H., Marletta M.A., Patti G.J., Siuzdak G. | Toward 'Omic' Scale Metabolite Profiling: A Dual Separation – Mass Spectrometry Approach for Coverage of Lipids and Central Carbon Metabolism | Analytical Chemistry, 2013, 85(14), 6876-84 |
| Tautenhahn R., Cho K. Y., Uritboonthai W., Zhu Z., Patti G. J., Siuzdak G. | An accelerated workflow for untargeted metabolomics using the METLIN database | Nature Biotechnology, 2012, 30(9), 826-8 |
| Panopoulos A.D., Yanes O., Ruiz S., Kida Y.S., Diep D., Tautenhahn R., Herreras A., Batchelder E.M., Plongthongkum N., Lutz M., Berggren W.T., Zhang K., Evans R.M., Siuzdak G., Izpisua-Belmonte J.C. | The metabolome of induced pluripotent stem cells reveals metabolic changes occurring in somatic cell reprogramming | Cell Research, 2012, 22, 168-177 |
| Patti G.J., Tautenhahn R., Siuzdak G. | Meta-Analysis of untargeted metabolomic data from multiple profiling experiments | Nature Protocols, 2012, 7(3), 508-516 |
| Patti G.J., Yanes O., Siuzdak G. | Innovation: Metabolomics: the apogee of the omics trilogy. | Nat Rev Mol Cell Biol., 2012, 13, 263-269 |
| Patti G.J., Yanes O., Shriver L., Courade J-P., Tautenhahn R., Manchester M., Siuzdak G. | Metabolomics Implicates Altered Sphingolipid Metabolites in Chronic Pain of Neuropathic Origin | Nature Chemical Biology, 2012, 8, 232-234 |
| Greving M., Cheng X., Reindl W., Bowen B., Deng K., Louie K., Nyman M., Cohen J., Singh A., Simmons B., Adams P., Siuzdak G., Northen T. | Acoustic deposition with NIMS as high throughput enzyme activity assay | Analytical and Biochemical Chemistry, 2012, |
| Tautenhahn R., Patti G.J., Rinehart D., Siuzdak G. | XCMS Online (xcmsonline.scripps.edu): A web-based platform to process untargeted metabolomic data | Analytical Chemistry, 2012, 84(11), 5035-5039 |
| Ukrohne T.U., Westenskow P.D., Kurihara T., Friedlander D.F., Lehmann M., Dorsey A.L., Li W.L., Zhu S.Y., Schultz A., Wang J.H., Siuzdak G., Ding S., Friedlander M. | Generation of Retinal Pigment Epithelial Cells from Small Molecules and OCT4 Reprogrammed Human Induced Pluripotent Stem Cells | Stem Cells Translational Medicine, 2012, 1(2), 96-109 |
| Marchetti V., Yanes O., Aguilar E., Wang M., Friedlander D., Moreno S., Storm K., Zhan M., Naccache S., Nemerow G., Siuzdak G., Friedlander M. | Differential Macrophage Polarization Promotes Tissue Remodeling and Repair in a Model of Ischemic Retinopathy | Scientific Reports, 2011, 1(76), 1-12 |
| Greving M.P., Patti G.J., Siuzdak G. | Nanostructure-Initiator Mass Spectrometry (NIMS) Metabolite Analysis and Imaging | Analytical Chemistry, 2011, 83(1), 2-7 |
| Yanes O., Tautenhahn R., Patti G., Siuzdak G. | Expanding Coverage of the Metabolome for Global Metabolite Profiling | Analytical Chemistry, 2011, 83(6), 2152-2161 |
| Tautenhahn R., Patti G.J., Kalisiak E., Miyamoto T., Schmidt M., Fan Y.L., McBee J., Baliga N.S., Siuzdak G. | metaXCMS: Second-Order Analysis of Untargeted Metabolomics Data | Analytical Chemistry, 2011, 83, 696-700 |
| Lancaster WA, Praissman JL, Poole FL II, Cvetkovic A, Menon AL, Scott JW, Jenney FE Jr, Thorgersen MP, Kalisiak E, Apon JA, Trauger SA, Siuzdak G, Tainer JA, Adams MWW | A Computational Framework for Proteome-Wide Pursuit and Prediction of Metalloproteins using ICP-MS and MS/MS Data | BMC Bioinformatics, 2011, 12, 1-12 |
| Pendyala G., Trauger S.A., Siuzdak G., Fox, H.S. | Short Communication: Quantitative Proteomic Plasma Profiling Reveals Activation of Host Defense to Oxidative Stress in Chronic SIV and Methamphetamine Comorbidity | Aids Research and Human Retrovirus, 2011, 27(2), 179-182 |
| Patti G.J, Tautenhahn R., Fonslow B.R., Cho Y., Deutschbauer A., Arkin A., Northen T., Siuzdak G. | Meta-Analysis of Global Metabolomics and Proteomics Data to Link Alterations with Phenotype | Spectroscopy (cover article), 2011, 26(3), 151-154 |
| Long J.Z., Cisar J.S., Miliken D., Niessen S., Wang C., Trauger S.A., Siuzdak G., Cravatt B.F. | Metabolomics annotates ABHD3 as a physiologic regulator of medium-chain phospholipids | Nature Chemical Biology, 2011, 7, 763-765 |
| Powers M.E., Smith P.A., Roberts T.C., Fowler B.J., King C.C., Trauger S.A., Siuzdak G., Romesberg F.E. | Type I Signal Peptidase and Protein Secretion in Staphylococcus epidermidis | Journal of Bacteriology, 2011, 193(2), 340-348 |
| Yanes O., Hsu J., Wong D.M., Sanchez-Ruiz A., Benton H.P., Trauger S.A., Despont C., Ding S., Siuzdak G. | Metabolic oxidation regulates embryonic stem cell differentiation | Nature Chemical Biology, 2010, 6, 411-417 |
| Pendyala G., Trauger S.A., Siuzdak G., Fox H.S. | Quantitative Plasma Proteomic Profiling Identifies the Vitamin E Binding Protein Afamin as a Potential Pathogenic Factor in SIV Induced CNS Disease | J Proteome Res., 2010, 9(1), 352-358 |
| Patti G.J., Woo H.K., Yanes O., Shriver L., Thomas D., Uritboonthai W., Apon J.V., Steenwyk R., Manchester M., Siuzdak G. | Detection of Carbohydrates and Steroids by Cation-Enhanced Nanostructure-Initiator Mass Spectrometry (NIMS) for Biofluid Analysis and Tissue Imaging | Analytical Chemistry, 2010, 82(1), 121-128 |
| Dorrell M.I., Aguilar E., Jacobson R., Trauger S.A., Friedlander J., Siuzdak G., Friedlander | Maintaining Retinal Astrocytes Normalizes Revascularization and Prevents Vascular Pathology Associated with Oxygen-Induced Retinopathy | Glia, 2010, 58(1), 43-54 |
| Lowe R., Szili E., Kirkbride P., Thissen H., Siuzdak G., Voelcker N. | Combined Immunocapture and Laser Desorption/Ionization Mass Spectrometry on Porous Silicon | Analytical Chemistry, 2010, 82(10), 4201-8 |
| Cvetkovic A., Menon A.L., Thorgersen M.P., Scott J.W., Poole F.L. II, Jenney F.E. Jr., Lancaster W.A., Praissman J.L., Shanmukh S., Vaccaro B.J., Trauger S.A., Kalisiak E., Apon J.V., Siuzdak G., Yannone S.M., Tainer J.A., Adams M.W.W. | Microbial metalloproteomes are largely uncharacterized | Nature, 2010, 466, 779-784 |
| Facciotti M.T., Pang W.L., Lo F-Y., Whitehead K., Koide T., Masumura K., Pan M., Kaur A., Larsen D.J., Reiss D.J., Hoang L., Kalisiak E., Northen T., Trauger S.A., Siuzdak G., Baliga N.S. | Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive system analysis | BMC Systems Biology, 2010, 4, 64 |
| Patti G.J., Shriver L., Wassif C.A., Woo H-K., Uritboonthai W., Manchester M., Forbes D.P., Siuzdak G. | Nanostructure-Initiator Mass Spectrometry Imaging of Brain Cholesterol Metabolites in Smith-Lemli-Opitz Syndrome | Neuroscience, 2010, 170(3), 858-64 |
| Kopp F., Komatsu T., Nomura D.K., Trauger S.A., Thomas J.R., Siuzdak G., Simon G.M., Cravatt B.K. | The Glycerophospho Metabolome and Its Influence on Amino Acid Homeostasis Revealed by Brain Metabolomics of GDE(-/-) Mice | Chemistry and Biology, 2010, 17(8), 831-840 |
| Ivey R.M., Gentle Jr. T.M.. Moore R.L., Towns M.L., Bachur Jr. N., Rosenstein R.W., Nadeau J.G., Goldenbaum P.E., Shi S., Copertino D., Garrett J., Tice G., Siuzdak G., Want E., Shen Z. | Patent #7,632,685, 2009, | |
| Yanes O., Woo H-H., Northen T.R., Oppenheimer S.R., Schriver L., Apon J., Estrada M.N., Potchoiba M.J., Steenwyk R., Manchester M., Siuzdak G. | Nanostructure Initiator Mass Spectrometry: Tissue Imaging and Direct Biofluid Analysis | Anal Chem, 2009, 81(8), 2969-75 |
| Kalisiak J., Trauger S., Kalisiak E., Morita H., Fokin V., Adams M.M., Sharpless K.B., Siuzdak G. | Identification of a New Endogenous Metabolite and the Characterization of Its Protein Interactions through an Immobilization Approach | J. Am. Chem. Soc., 2009, 131(1), 378-386 |
| Wikoff W.R., Anfora A.T., Liu J.W., Shultz P.G., Lesley S.A., Peters E.C., Siuzdak G. | Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites | Proc Natl Sci USA, 2009, 106(10), 3698-703 |
| Wikoff W.R., Kalisiak E., Trauger S., Manchester M., Siuzdak G. | Response and recovery in the plasma metabolome tracks the acute LCMV-induced immune response | J Proteome Res, 2009, 8(7), 3578-87 |
| Menon A.L., Poole F.L., Cvetkovic A., Trauger S.A., Kalisiak E., Scott J.W., Shanmukh S., Praissman J., Jenney F.E., Wikoff W.R., Apon J.V., Siuzdak G., Adams M.W.W. | Novel Multiprotein Complexes Identified in the Hyperthermophilic Archaeon Pyrococcus furiosus by Non-denaturing Fractionation of the Native Proteome | Molecular and Cellular Proteomics, 2009, 8(4), 735-751 |
| Pendyala G., Trauger S.A., Kalisiak E., Ellis R.J., Siuzdak G., Fox H.S. | Cerebrospinal Fluid Proteomics Reveals Potential Pathogenic Changes in the Brains of SIV-Infected Monkeys | Journal of Proteome Research, 2009, 8(5), 2253-2260 |
| Koudelka K.J., Destito G., Plummer E.M., Trauger S.A., Siuzdak G., Manchester M. | Endothelial Targeting of Cowpea Mosaic Virus (CPMV) via Surface Vimentin | Plos Pathogens, 2009, 5(5), e1000417 |
| Crews B., Wikoff W.R., Patti G.J., Woo H.K., Kalisiak E., Heideker J., Siuzdak G. | Variability analysis of human plasma and cerebral spinal fluid reveals statistical significance of changes in mass spectrometry-based metabolomics data | Anal Chem, 2009, 81(20), 8538-44 |
| Pendyala G., Trauger S.A., Kalisiak E., Ellis R.J., Ciborowski P., Gendelman H.E., Siuzdak G., Fox H.S. | Proteomic Profiling of Cerebrospinal Fluid Reveals Potential Neuropathogenic Changes in neuroAIDS | Journal of Neurovirology, 2009, 15, 72-73 |
| Woo H.K., Go E.P., Hoang L., Trauger S.A., Bowen B., Siuzdak G., Northen T.R. | Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry | Rapic Communications in Mass Spectrometry, 2009, 23(12), 1849-1855 |
| Zhou H.Y., Wu S.L., Joo J.Y., Zhu S.Y., Han D.W., Lin T.X., Trauger S., Bien G., Yao S., Zhu Y., Siuzdak G., Scholer H.R., Duan L.X., Ding S. | Generation of Induced Pluripotent Stem Cells Using Recombinant Proteins | Cell Stem Cell, 2009, 4(6), 581-581 |
| Dorrell M.I., Aguilar E., Jacobson R., Yanes O., Gariano R., Heckenlively J., Banin E., Ramirez G.A., Gasmi M., Bird A., Siuzdak G., Friedlander M. | Antioxidant or neurotrophic factor treatment preserves function in a mouse model of neovascularization-associated oxidative stress | J. Clin. Invest., 2009, 119(3), 611-623 |
| O'Maille G., Go E.P., Hoang L., Want E.J., Smith C., O'Maille P., Nordstrom A., Morita H., Qin C., Uritboonthai W., Apon J., Moore R., Garrett J., Siuzdak G. | Metabolomics relative quantitation with mass spectrometry using chemical derivatization and isotope labeling | Spectroscopy - An International Journal, 2008, 22(5), 327-343 |
| Vallon V., Eraly S.A., Wikoff W.R., Rieg T., Kaler G., Truong D.M., Ahn S-Y., Mahapatra N.R., Mahata S.K., Gangoiti J.A., Wu W., Barshop B.A., Siuzdak G., Nigam S.K. | Organic anion transporter 3 contributes to the regulation of blood pressure | Journal of the American Society of Nephrology, 2008, 19(9), 1732-1740 |
| Nordstrom A. Want E., Northen T., Lehtio J., Siuzdak G. | Multiple Ionization Mass Spectrometry Strategy Reveals the Complexity of Metabolomics | Analytical Chemistry, 2008, 80, 421-429 |
| Trauger S.A., Kalisiak E., Kalisiak J., Morita H., Weinbergb M.V., Menon A.L., Poole F.L. II, Adams M.W.W., Siuzdak G. | Correlating the Transcriptome, Proteome, and Metabolome in the Environmental Adaptation of a Hyperthermophile | Journal of Proteome Research, 2008, 7, 1027-1035 |
| Northen T.R., Lee J-C, Hoang L., Raymond J., Hwang D-R, Yannone S.M., Wong C-H, Siuzdak G. | A Nanostructure-Initiator Mass Spectrometry-Based Enzyme Activity Assay | PNAS, 2008, 105(10), 3678-3683 |
| Wikoff W.R., Pendyala G., Siuzdak G., Fox H.S. | Metabolomic analysis of the cerebrospinal fluid reveals changes in phospholipase expression in the CNS of SIV-infected macaques | Journal of Clinical Investigation, 2008, 118(7), 2661-2669 |
| Woo H.K., Northen T.R., Yanes O., Siuzdak G. | Nature Protocols, 2008, 3(8), 1341-1349 | |
| Benton H.P., Wong D.M., Siuzdak G. | XCMS2: Processing Tandem Mass Spectrometry Data for Metabolite Identification and Structural Characterization | Analytical Chemistry, 2008, 80(16), 6382-6389 |
| Bunner A.E., Trauger S.A., Siuzdak G., Williamson J.R. | Quantitative ESI-TOF Analysis of Macromolecular Assembly Kinetics | Analytical Chemistry, 2008, 80(24), 9379-9386 |
| Nordstrom A., He L., Siuzdak G. | Desorption/Ionization on Silicon (DIOS) | Encyclopedia of Mass Spectrometry, Editor Michael Gross, 2007, 6, 676-683 |
| Go E.P., Uritboonthai W., Apon J.A., Trauger S.A., Nordstrom A., O'Maille G., Brittain S., Peters E.C., Siuzdak G. | Selective Metabolite and Peptide Capture/Mass Detection Using Fluorous Affinity Tags | Journal of Proteome Research, 2007, 6, 1492-1499 |
| Cohen L., Go E.P. , Siuzdak G. | Small Molecule Desorption/Ionization Mass Analysis | MALDI-MS Franz Hillenkamp - editor, 2007, IX, 299 |
| Northen T.R., Woo H.K., Northen M.T., Nordstrom A., Uritboonthai W., Turner K., Siuzdak G. | High Surface Area of Porous Silicon Drives Desorption of Intact Molecules | J. Am. Soc. Mass Spectrom., 2007, 18(11), 1945-1949 |
| Pendyala G., Want E.J., Webb W., Siuzdak G., Fox H.S. | Biomarkers for NeuroAIDS: The widening scope of Metabolomics | Journal of NeuroImmune Pharmacology, 2007, 2, 72-80 |
| Want E.J., Nordstrom A., Morita H., Siuzdak G. | From Exogenous to Endogenous: The Inevitable Imprint of Mass Spectrometry in Metabolomics | Journal of Proteome Research, 2007, 6(2), 459-468 |
| Northen T.R., Yanes O., Northen M.T., Marrinucci D., Uritboonthai W., Apon J., Golledge S.L., Nordstrom A., Siuzdak G. | Clathrate nanostructures for mass spectrometry | Nature, 2007, 449(7165), 1033-U3 |
| Wikoff W.R., Gangoitti J.A., Barshop B.A., Siuzdak G. | Metabolomics identifies perturbations in human disorders of propionate metabolism | Clinical Chemistry, 2007, 53(12), 2169-2176 |
| Mutch D.M., O'Maille G., Wikoff W., Wiedmer T., Sims P.J., Siuzdak G. | Mobilization of pro-inflammatory lipids in obese Plscr3-deficient mice | Genome Biology, 2007, 8, R38 |
| Chace D.H., Barr J.R., Duncan M.W., Matern D., Morris M.R., Palmer-Toy D.E., Rockwood A.L., Siuzdak G., Urbani A., Yergey A.L., Chan Y.M. | Clinical and Laboratory Standards Institute, 2007, 27, 1-91 | |
| Lissauer M., Johnson S.B., Siuzdak G., Bochicchio G., Whiteford C., Nussbaumer W., Moore R., Scalea T.S. | Coagulation and Complement Protein Differences Between Septic and Uninfected SIRS Patients | The Journal of Trauma, Injury, Infection and Critical Care, 2007, 62(5), 1080-1094 |
| Wikoff W.R., Gangoiti J.A., Barshop B.A., Siuzdak G. | Clin Chem, 2007, 53(12), 2169-76 | |
| Nordstrom A., Apon J.V., Uritboonthai W., Go E.P., Siuzdak G. | Surfactant Enhanced Desorption/Ionization on Silicon (DIOS) Mass Spectrometry | Analytical Chemistry, 2006, 78, 272-278 |
| Want E.J., O'Maille G., Smith C.A., Brandon T.R., Uritboonthai W., Qin C., Trauger S.A., Siuzdak G. | Solvent-Dependent Metabolite Distribution, Clustering and Protein Extraction for Serum Profiling with Mass Spectrometry | Analytical Chemistry, 2006, 78, 743-752 |
| Siuzdak G. | MCC Press, San Diego, 2006, III, 1-252 | |
| Smith C.A., Want E.J., O'Maille G., Abagyan R., Siuzdak G. | XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching and identification | Analytical Chemistry, 2006, 78, 779-787 |
| Want E.J., Smith C., Siuzdak G. | Phospholipid Capture Combined with Non-Linear Chromatographic Correction for Improved Metabolite Profiling | Metabolomics, 2006, 2, 145-154 |
| Shen Z., Want E.J., Chen W., Keating W, Nussbaumer W, Moore R, Gentle T.M., Siuzdak G. | Sepsis Plasma Protein Profiling with Immunodepletion, Three-Dimensional Liquid Chromatography Tandem Mass Spectrometry and Spectrum Counting | Journal of Proteome Research, 2006, 5 (11), 3154 - 3160 |
| Lee J-C.,Wu C-Y., Apon J.V., Siuzdak G., Wong C-H. | Reactivity-Based One-Pot Synthesis of Tumor-Associated Antigen N3 Minor Octasaccharide: A Case Study of DIOS-MS Sugar Array** | Angew Chem Int Ed, 2006, 45, 2753 - 2757 |
| Go E.P., Wikoff W., Shen Z., O'Maille G., Morita H., Conrads T.P., Nordstrom A., Trauger S.A., Uritboonthai W., Lucas D., Chan K.C., Veenstra T.D., Lewicki H., Oldstone M.B., Schneemann A., Siuzdak G. | Mass Spectrometry Reveals Specific and Global Molecular Transformations during Viral Infection | Journal of Proteome Research, 2006, 5 (9), 2405 - 2416 |
| Nordstrom A., O'Maille G., Qin C., Siuzdak G. | Non-linear Data Alignment for UPLC-MS and HPLC-MS based Metabolomics: Quantitative Analysis of Endogenous and Exogenous Metabolites in Human Serum | Analytical Chemistry, 2006, 78, 7289-3295 |
| Steenwyk R., Hutzler J.M., Sams J., Shen Z., Siuzdak G. | Atmospheric pressure desorption/ionization on silicon ion trap mass spectrometry applied to the quantitation of midazolam in rat plasma and determination of midazolam 1'-hydroxylation kinetics in human liver microsomes. | Rapid Communication in Mass Spectrometry, 2006, 20, 3717-3722 |
| Smith C.A., O'Maille G., Want E.J., Qin C., Trauger S.A., Brandon T.R., Custodio D.E., Abagyan R., Siuzdak G. | METLIN: a metabolite mass spectral database | Therapeutic Drug Monitoring, 2005, 27(6), 747-751 |
| Lowe R., G E., Tong G., Voelcker N.H., Siuzdak G. | Monitoring EDTA and endogenous metabolite from serum with mass spectrometry | Spectroscopy, 2005, 19(13), 137-146 |
| Lacy E.R., Wang Y., Post J., Nourse A., Webb W., Mapelli M., Musacchio A., Siuzdak G., Kriwacki R. | Journal of Molecular Biology, 2005, 349, 764-773 | |
| Bothner B., Taylor D., Jun B., Lee K., Siuzdak G., Schultz C.P., Johnson J. | Maturation of a tetravirus capsids alters the dynamic properties and creates a metastable complex | Virology, 2005, 334, 17-27 |
| Go E.P., Apon J.V., Luo G., Saghatelian A., Daniels R.H., Sahi V., Cravatt B., Vertes A., Dubrow R., Siuzdak G. | Desorption/ionization on silicon nanowires | Analytical Chemistry, 2005, 77, 1641-6 |
| Want E., Cravatt B.F., Siuzdak G. | The Expanding Role of Mass Spectrometry in Metabolite Profiling and Characterization | ChemBioChem, 2005, 6, 1941-1951 |
| Talkington M.T., Siuzdak G., Williamson J.R. | An assembly landscape for the 30S ribosomal subunit | Nature, 2005, 438, 628-632 |
| Luo G., Chen Y., Siuzdak G., Vertes A. | Surface Modification and Laser Pulse Length Effects on Internal Energy Transfer in DIOS | Journal of Physical Chemistry B, 2005, 109, 24450-24456 |
| Friedlander M.H., Mehra P.K., Siuzdak G., Stevenson D.D. | Ocular Reactions During Aspirin Challenge in Aspirin-Exacerbated Respiratory Disease | Investigative Ophthalmology & Visual Science, 2005, 46(Sup. S), 943 |
| Siuzdak G. | An Introduction to Mass Spectrometry Ionization | Journal of the Association of Lab Automation, 2004, 9(2), 50-63 |
| Shen Z., Thomas J.J., Siuzdak G., Blackledge R.D. | A case study on forensic polymer analysis by DIOS-MS: the suspect who gave us the SLIP | Journal of Forensic Science, 2004, 49, 1-8 |
| Meng J.-C., Siuzdak G., Finn M.G. | Affinity Mass Spectrometry from a Tailored Porous Silicon Surface | Chemical Communications, 2004, 18, 2108-2109 |
| Kriwacki R., Reisdorph N., Siuzdak G. | Protein Structure Characterization with Mass Spectrometry | Spectroscopy, 2004, 18, 37-47 |
| Wu, E., Trauger, S.A., Pache, L., Mullen, T.-M., Von Seggern, D.J., Siuzdak, G., Nemerow, G.R. | Membrane Cofactor Protein (MCP: CD46) is a Receptor for Adenoviruses Associated with Epidemic Keratoconjunctivitis | Journal of Virology, 2004, 78, 3897-3905 |
| Meng J.-C., Averbuj C., Siuzdak G., Finn M.G. | Cleavable Linkers for Porous Silicon-Based Mass Spectrometry | Angewandte Chemie, 2004, 43, 1255-1260 |
| Bothner B., Siuzdak G. | Electrospray Ionization of a Whole Virus: Analyzing Mass, Structure and Viability | ChemBioChem, 2004, 5(3), 258-260 |
| Shen Z., Go E.P., Gamez A., Apon J.V., Fokin V., Greig M., Ventura M., Crowell J.E., Blixt O., Paulson J.C., Stevens R., Finn M.G., Siuzdak G. | A Mass Spectrometry Plate Reader: Monitoring Enzyme and Inhibitor Activity with Desorption/Ionization on Silicon (DIOS) Mass Spectrometry | ChemBioChem, 2004, 5, 921-927 |
| Thomas J.J., Bothner B., Traina J., Benner W.H., Siuzdak G. | Electrospray Ion Mobility Spectrometry of Intact Viruses | Spectroscopy, 2004, 18, 31-36 |
| Trauger S., Go E.P., Shen Z., Apon J.V., Compton B., Bouvier E.S.P., Finn M.G., Siuzdak G. | High Sensitivity and Analyte Capture with Desorption/Ionization Mass Spectrometry on Silylated Silicon | Analytical Chemistry, 2004, 76, 4484-4489 |
| Trauger S.A., Wu E., Bark S.B., Nemerow G.R., Siuzdak G. | The Identification of an Adenovirus Receptor by Using Affinity-Capture and Mass Spectrometry | ChemBioChem, 2004, 5(8), 1095-1099 |
| Saghatelian A., Trauger S.A., Want E., Hawkins G., Siuzdak G., Cravatt B.F. | Assignment of Endogenous Substrates to Enzyme by Global Metabolite Profiling | Biochemistry, 2004, 43, 14332-14339 |
| Want E.J., Greig M., Compton B.J., Bola?os B., Siuzdak G. | Mass Spectrometry in High Throughput Analysis | Spectroscopy, 2003, 17, 663-680 |
| Want E., Compton B.J., Hollenbeck T., Siuzdak G. | The Application of Mass Spectrometry in Pharmacokinetics | Spectroscopy, 2003, 17, 681-691 |
| Siuzdak G. | MCC Press: San Diego, 2003, | |
| Prenni J.E., Shen Z., Trauger S., Chen W., Siuzdak G. | Protein Characterization using Liquid Chromatography Desorption Ionization on Silicon Mass Spectrometry (LC-DIOS-MS) | Spectroscopy, 2003, 17, 693-698 |
| Compton B.J., Siuzdak G. | Mass Spectrometry in Nucleic Acid, Carbohydrate, and Steroid Analysis | Spectroscopy, 2003, 17, 699-713 |
| Barker, G., Want, E., Boydston, J., Siuzdak, G. | Mass Spectrometry | Science of Synthesis/ Houben-Weyl, 2003, 7.6, 680-695 |
| Lewis W., Shen Z., Finn M.G., Siuzdak G. | Desorption/ionization on silicon (DIOS) mass spectrometry: background and applications | International Journal of Mass Spectrometry, 2003, 226, 107-116 |
| Meyers A., Trauger S., Webb W., Reisdorph N., Wranik C., Peters E., Siuzdak G. | Spectroscopy, 2003, 17, 1-15 | |
| Yao S., Meng J., Siuzdak G., Finn M.G. | New Catalysts for Asymmetric Hydrosilylation of Ketones Discovered by Parallel Mass Screening | Journal of Organic Chemistry, 2003, 68, 2540-2546 |
| Trauger S.A., Junker T., Siuzdak G. | Investigating Viral Proteins and Intact Viruses with Mass Spectrometry | Modern Mass Spectrometry, 2003, 225, 265-282 |
| Go E.P., Prenni J.E., Wei J., Jones A., Hall S.C., Witkowska E., Shen Z., Siuzdak G. | Desorption/Ionization on Silicon Time-of-Flight/Time-of-Flight (DIOS-TOF/TOF) Mass Spectrometry | Anal. Chem., 2003, 75, 2504-2506 |
| Borman S., Russell H., Siuzdak G. | A Mass Spectrometry Timeline | Today's Chemist, 2003, , 47-49 |
| Reisdorph N., Thomas J.J., Katpally U., Chase E., Harris K., Siuzdak G., Smith T.J. | Human Rhinovirus Capsid Dynamics is Controlled by Canyon Flexibility | Virology, 2003, 314, 34-44 |
| Go E.P., Shen Z., Harris K., Siuzdak G. | Quantitative Analysis with Desorption/Ionization on Silicon (DIOS) Mass Spectrometry using Electrospray Deposition | Analytical Chemistry, 2003, 75, 5475-5479 |
| Sonderegger M., Staniszewski K., Meyers A., Siuzdak G. | A Bioinformatics Approach for Mass Spectrometry Data Processing: Applications to Proteomics and Small Molecule Analysis | Spectroscopy, 2002, 16, 81-87 |
| Shen Z., Yao S., Crowell J., Siuzdak G., Finn M.G. | DIOS-MSEED: A Chip-Based Method for Measurement of Enantiomeric Excess by Kinetic Resolution/Mass Spectrometry | Israel Journal of Chemistry special issue commemorating Wolf Prize to Sharpless, Kagan and Noyori, 2002, 41, 313-316 |
| Grayson M. Editor, Siuzdak G. | Chemical Heritage Press, 2002, , 149 | |
| Bothner B., Carmitchel L., Staniszewski K., Sonderegger M., Siuzdak G. | Biomolecule Structure Characterization in the Gas Phase using Mass Spectrometry | Spectroscopy, 2002, 16, 71-79 |
| Smith T.J., Schmidt T., Fang J., Wu J., Siuzdak G., Stanley C. | The Structure of Apo Human Glutamate Dehydrogenase Elucidates the Mechanism of Subunit Communication and the Hyerinsulinism/Hyperammonemia Syndrome | Journal of Molecular Biology, 2002, 318, 765-777 |
| Trauger S.A., Webb W., Siuzdak G. | Peptide and Protein Analysis with Mass Spectrometry | Spectroscopy, 2002, 16, 15-28 |
| Thomas J.J., Blackledge R.D., Siuzdak G. | Desorption-Ionization on Silicon Mass Spectrometry: An Application in Forensics | Analytica Chemica Acta, 2001, 442, 183-190 |
| Shen Z., Thomas J.J., Averbuj C., Broo K.M., Engelhard M., Crowell J.E., Finn M.G., Siuzdak G. | Porous Silicon as a Versatile Platform for Laser Desorption/Ionization Mass Spectrometry | Analytical Chemistry, 2001, 73(3), 612-619 |
| Broo K.M., Wei J., Marshall D., Brown F., Smith T.J., Johnson J.E., Schneemann A., Siuzdak G. | Viral Capsid Mobility: A Dynamic Conduit for Inactivation | Proceedings of the National Academy of Sciences, 2001, 98, 2274-2277 |
| Thomas J.J., Shen Z., Crowell J.E., Finn M.G., Siuzdak G. | Desorption/Ionization on Silicon (DIOS): A Diverse Mass Spectrometry Platform for Protein Characterization | Proceedings of the National Academy of Sciences, 2001, 98, 4932-4937 |
| Bark S.J., Muster N., Yates J.R., Siuzdak G. | High-Temperature Protein Mass Mapping Using a Thermophilic Protease | Journal of the American Chemical Society, 2001, 123, 1774-1775 |
| Fuerstenau S.D., Benner W.H., Thomas J.J., Brugidou C., Bothner B., Siuzdak G. | Mass Spectrometry of an Intact Virus | Angewandte Chemie, 2001, 40, 542-544 |
| Kriwacki R., Siuzdak G. | Probing Protein/Protein Interactions with Mass Spectrometry | Methods in Molecular Biology Humana Press, 2000, |
| Thomas J.J., Bakhtiar R., Siuzdak G. | Mass Spectrometry in Viral Proteomics | Accounts of Chemical Research, 2000, 33, 179-187 |
| Lewis J.K., Wei J., Siuzdak G. | MALDI Mass Spectrometry in Protein and Peptide Analysis | Encyclopedia of Analytical Chemistry, John Wiley and Sons, NY, 2000, |
| Bothner B., Chavez R., Wei J., Strupp C., Phung Q., Schneemann A., Siuzdak G. | Monitoring Enzyme Catalysis with Mass Spectrometry | Journal of Biological Chemistry, 2000, 275, 13455-13459 |
| Guo J., Wu J., Siuzdak G., Finn M.G. | Measurement of Enantiomeric Excess by Kinetic Resolution and Mass Spectrometry | Angewandte Chemie Int. Ed., 1999, 38, 1755-1758 |
| Schalley C.A., Rivera J.M., Martin T., Santamaria J., Siuzdak G., Rebek, J. Jr. | Structural Examination of Supramolecular Architectures by Electrospray Ionization Mass Spectrometry | Eur. J. Org. Chem., 1999, , 1325-1331 |
| Schalley C.A., Castellano R.K., Brody M.S., Rudkevich D.M., Siuzdak G., Rebek J. | Investigating Molecular Recognition by Mass Spectrometry: Characterization of Calixarene-Based Self-Assembling Capsule Hosts with Charged Guests | J. Am. Chem. Soc., 1999, 121(19), 4568-4579 |
| Hollenbeck T., Siuzdak G., Blackledge R.D. | Electrospray and MALDI Mass Spectrometry in the Identification of Spermicides in Criminal Investigations | Journal of Forensic Sciences, 1999, 44, 783-788 |
| Takayama S., Chung S.J., Igarashi Y., Ichikawa Y., Sepp A., Lechler R.I., Wu J.Y. Hayashi T., Siuzdak G., Wong C.H. | Selective inhibition of beta-1,4- and alpha-1,3-galactosyltransferases: Donor sugar-nucleotide based approach | Bioorganic & Medicinal Chemistry, 1999, 7, 401-409 |
| Tsui V., Garcia C., Cavagnero S., Siuzdak G., Dyson H.J., Wright P.E. | Quench-Flow Experiments Combined with Mass Spectrometry Show Apomyoglobin Folds through an Obligatory Intermediate | Protein Science, 1999, 8, 45-49 |
| Marmey P., Bothner B., Jacquot E., de Kochko A., Ong C.A., Yot P., Siuzdak G., Beachy R.N., Fauquet C. | Rice Tungro Bacilliform Virus Open Reading Frame 3 Encodes a Single 37-kDa Coat Protein | Virology, 1999, 253, 319-326 |
| Siuzdak G. | Innovations Continue in Mass Spectrometry | Advance, 1999, 8(1), 30-34 |
| Siuzdak G., Hollenbeck T., Bothner B. | Preparative mass spectrometry with electrospray ionization | Journal of Mass Spectrometry, 1999, 34, 1087-1088 |
| Chatman K.S., Hollenbeck T., Hagey L., Vallee M., Purdy R., Weiss F., Siuzdak G. | Nanoelectrospray Mass Spectrometry and Precursor Ion Monitoring for Quantitative Steroid Analysis and Attomole Sensitivity | Analytical Chemistry, 1999, 71, 2358-2363 |
| Siuzdak G. | in The Encyclopedia of Molecular Biology T.E. Creighton, Ed., John Wiley & Sons, Inc., New York, NY, 1999, | |
| Bothner B., Schneemann A., Marshall D., Reddy V., Johnson J.E., Siuzdak G. | Crystallographically Identical Virus Capsids Display Different Properties in Solution | Nature Structural Biology, 1999, 6, 114-116 |
| Lewis J.K., Chiang J., Siuzdak G. | Monitoring Protein-Drug Interactions with Mass Spectrometry and Proteolysis Protein Mass Mapping as a Drug Assay | Journal of the Association for Laboratory Automation, 1999, 4, 46-48 |
| Yang C., Gu Z., Yang M., Lin S., Siuzdak G., Smith C.V. | Identification of Modified Tryptophan Residues in Apolipoprotein B-100 Derived from Copper Ion-Oxidized Low-Density Lipoprotein | Biochemistry, 1999, 38, 15903-15908 |
| Wei J., Buriak J., Siuzdak G. | Desorption-ionization mass spectrometry on porous silicon | Nature, 1999, 399(6733), 243-246 |
| Siuzdak G., Buriak J., Wei J. | patent #6, 1999, 288, 390 | |
| Siuzdak G. | Probing Molecular Diversity with Mass Spectrometry | Journal of the Association for Laboratory Automation, 1998, 3(2), 34-37 |
| Niece, R., Siuzdak, G. | Journal of Biomolecular Techniques, 1998, 9, 22-23 | |
| Owens D.R., Bothner B., Harris K., Phung Q., Siuzdak G. | Aspects of Oligonucleotide and Peptide Sequencing with MALDI and Electrospray Mass Spectrometry | Bioorganic and Medicinal Chemistry, 1998, 6, 1547-1554 |
| Siuzdak G. | Probing Viruses with Mass Spectrometry | Journal of Mass Spectrometry, 1998, 33(3), 203-211 |
| Bothner B., Dong X.F., Bibbs L., Johnson J.E., Siuzdak G. | Evidence of Viral Capsid Dynamics Using Limited Proteolysis and Mass Spectrometry | Journal of Biological Chemistry, 1998, 273(2), 673-676 |
| Siuzdak G., Lewis J.K. | Applications of mass spectrometry in combinatorial chemistry | Biotechnology & Bioengineering with Combinatorial Chemistry, 1998, 61(2), 127-134 |
| Siuzdak G., Henriksen S. | New Directions in the Analysis of Brain Substances Related to Sleep and Wakefulness | Lydic, R. CRC Press, Methods in the Life Sciences Series; Molecular regulation of arousal states., 1998, , 181-190 |
| Lewis J.K., Bothner B., Smith T.J., Siuzdak G. | Antiviral Agent Blocks Breathing of Common Cold Virus | Proceedings of the National Academy of Sciences, USA, 1998, 95(12), 6774-6778 |
| Lewis J.K., Bendahmane M., Smith T.J., Beachy R.N., Siuzdak G. | Identification of viral mutants by mass spectrometry | Proceedings of the National Academy of Sciences, USA, 1998, 95, 8596-8601 |
| Kriwacki R., Siuzdak G. | Combined Use of Proteases and Mass Spectrometry in Structural Biology | Journal of Biomolecular Techniques, 1998, 9, 5-15 |
| Kriwacki R., Wu J., Tennant L., Wright P.E., Siuzdak G. | Probing Protein Structure Using Biochemical and Biophysical Methods: Proteolysis, Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry, High-Performance Liquid Chromatography and Size Exclusion Chromatography of p21graphy of p21Waf1/Cip1/Sdi1 | Journal of Chromatography A, 1997, 777, 23-30 |
| Takayama S., Martin R., Wu J., Laslo K., Siuzdak G., Wong C.H. | Chemoenzymatic Preparation of Novel Cyclic Imine Sugars and Rapid Biological Activity Evaluation Using Electrospray Mass Spectrometry and Kinetic Analysis | Journal of the American Chemical Society, 1997, 119(35), 8146-8151 |
| Wu J., Chatman K.S., Harris K., Siuzdak G. | An Automated MALDI Mass Spectrometry Approach for Optimizing Cyclosporin Analysis | Analytical Chemistry, 1997, 69(18), 3767-3771 |
| Wu J., Takayama S., Wong C.H., Siuzdak G. | Quantitative Electrospray Mass Spectrometry for the Rapid Assay of Enzyme Inhibitors | Chemistry & Biology, 1997, 4(9), 653-657 |
| Siuzdak G. | Academic Press: San Diego, CA, 1996, , 161 | |
| Fitzgerald M.C., Siuzdak G. | Biochemical Mass Spectrometry: Worth the Weight? | Chemistry and Biology, 1996, 3, 707-715 |
| Kriwacki R., Wu J., Siuzdak G., Wright P.E. | Probing Protein-Protein Interactions by Mass Spectrometry: Analysis of the p21/Cdk2 Complex | Journal of the American Chemical Society, 1996, 118, 5320-5321 |
| Fitzgerald M.C., Harris K., Shevlin C.G., Siuzdak G. | Direct Characterization of Solid Phase Resin-Bound Molecules by Mass Spectrometry | Bioorganic and Medicinal Chemistry Letters, 1996, 6(8), 979-982 |
| Siuzdak G., Bothner B., Yeager M., Brugidou C., Fauquet C.M., Hoey K., Chang C.M. | Mass Spectrometry and Viral Analysis | Chemistry & Biology, 1996, 3, 45 |
| Lerner R.A., Cravatt B., Boger D.L., Siuzdak G. and Henriksen S. | international PCT patent application WO 96/09817, 1996, | |
| Chang H.T., Chen C.T., Kondo T., Siuzdak G., and Sharpless K.B. | Asymmetric Dihydroxylation Enables Rapid Construction of Chiral Dendrimers based on 1,2-Diols | Angewandte Chemie, 1996, 35(2), 182-186 |
| Bothner B., Chatman K.S., Sarkisian M., Siuzdak G. | Liquid Chromatography Mass Spectrometry of Antisense Oligonucleotides | Bioorganic and Medicinal Chemistry Letters, 1995, 5(23), 2863-2868 |
| Siuzdak G., Bothner B. | Gas-Phase Micelles | Angewandte Chemie, 1995, 34(18), 2053-2055 |
| Cravatt B., Prospero-Garcia O., Siuzdak G., Gilula N.B., Henriksen S.J., Boger D.L., Lerner R.A. | Chemical Characterization of a Family of Brain Lipids with Sleep Inducing Potential | Science, 1995, 268, 1506-1509 |
| Krebs J.F., Siuzdak G., Dyson H.J., Stewart J.D., Benkovic S. | Detection of a Catalytic Antibody Species Acylated at the Active Site by Electrospray Mass Spectrometry | Biochemistry, 1995, 34, 720-723 |
| Siuzdak G., Zheng Y.L., Ramphal J.Y., Ichikawa Y., Nicolaou K.C., Gaeta F.C.A., Chatman K.S., Wong C.H. | Examination of the Sialyl Lewis X- Calcium Complex by Electrospray Mass Spectrometry | Bioorganic and Medicinal Chemistry Letters, 1994, 4, 2863-2866 |
| Siuzdak G. | The emergence of mass spectrometry in biochemical research | Proceedings of the National Academy of Sciences of the United States of America, 1994, 91, 11290-11297 |
| Lerner R.A., Siuzdak G., Prospero-Garcia O., Henriksen S.J., Boger D.L., Cravatt B. | Proceedings of the National Academy of Sciences of the United States of America, 1994, 91, 9505-9508 | |
| Stewart J.D., Krebs J.F., Siuzdak G., Berdis A.J., Smithrud D.B., Benkovic S.J. | Dissection of an Antibody-Catalyzed Reaction | Proc. Natl. Acad. Sci., 1994, 91, 7404-7409 |
| Siuzdak G., Krebs J.F., Benkovic S.J., Dyson H.J. | Binding of Hapten to a Single-Chain Catalytic Antibody Demonstrated by Electrospray Mass Spectrometry | Journal of the American Chemical Society, 1994, 116, 7937-7938 |
| Crano J., Knowles D., Kwiatkowski P., Flood T., Ross R., Chiang L., Lasch J., Chadha R., Siuzdak G. | Structure of Three Novel Photochromic Compounds; X-ray Crystallographic and Theoretical Studies | Acta Crystallographica Section B-Structure Science, 1994, 50, 772-779 |
| Rideout D., Bustamante A., Siuzdak G. | Cationic drug analysis using matrix-assisted laser desorption/ionization mass spectrometry: application to influx kinetics, multidrug resistance, and intracellular chemical change | Proceedings of the National Academy of Sciences of the United States of America, 1993, 90(21), 10226-10229 |
| Siuzdak G., Ichikawa Y., Munoz B., Caulfield T.J., Wong C.H., Nicolaou K.C. | Evidence of Calcium-Dependent Carbohydrate Association through Ion Spray Mass Spectrometry | Journal of the American Chemical Society, 1993, 115, 2877-2881 |
| Siuzdak G., Wendeborn S.V., Nicolaou K.C. | Cationization of Organometallo Carbonyl Compounds by Fast Ion Bombardment | Intern. J. of Mass Spectrom. and Ion Proc., 1992, 112, 79-91 |
| BelBruno J.J., Siuzdak G. | Resonant Ionization in Solution: Initiation of ion-molecule chemistry by REMPI | Resonance Ionization Spectroscopy 90, Inst. Phys. Conf. Ser., 1991, 114, 351-354 |
| BelBruno J.J., Siuzdak G. | REMPI-MS: Application to the Study of the Gas Phase Dynamics of Radical Cations | Resonance Ionization Spectroscopy 90, Inst. Phys. Conf. Ser., 1991, 114, 177-180 |
| Siuzdak G., BelBruno J.J. | Multiphoton Ionization of Nitrobenzene in Non-Aqueous Solutions: Characterization of the Cation and Ion-Molecule Chemistry | Laser Chemistry, 1991, 11(2), 83-93 |
| Siuzdak G., North S., BelBruno J.J. | Multiphoton Ionization of Phenol in NonAqueous Solutions: Characterization of the Cation and Ion-Molecule Chemistry | J. Phys. Chem., 1991, 95(13), 5186-5190 |
| BelBruno J.J., Siuzdak G., North S. | Multiphoton-Induced Chemistry of Phenol in Hexane at 266nm | Chem. Phys. Lett., 1990, 166, 167-172 |
| BelBruno J.J., Siuzdak G., North S. | UV Multiphoton Induced Chemistry of Nitrobenzene in Solution | Laser Chemistry, 1990, 10, 177-184 |
| Siuzdak G., BelBruno J.J. | Multiphoton Ionization Studies of Amines with UV-VIS Lasers | Applied Physics B, 1990, 50, 221-226 |
| Siuzdak G., BelBruno J.J. | Laser Multiphoton Dissociation/Ionization of Butylamines: Competitive Processes in Radical Cations | J. Phys. Chem., 1990, 94(11), 4559-4565 |
| Siuzdak G. | Ph. D. Thesis University Microfilms International, Dissertation Abstracts International B, 1990, 51(5)2385, 166 | |
| Marzzacco C.J., Deckey G., Colarulli R., Siuzdak G., Halpern A. | Excited-State Protonation and Photophysical Properties of Azaphenanthrenes | J. Phys. Chem., 1989, 93, 2935-2939 |
| Siuzdak G. | B.S. Thesis, Rhode Island College,, 1985, |